Links to software and other resources produced by the lab.

Software

SleepScore

Matlab scripts to perform sleep prediction from resting state fMRI. This tool provides the models used in our NeuroImage paperValidation of non-REM sleep stage decoding from resting state fMRI using linear support vector machines“. 

Access SleepScore here: https://github.com/andrealtmann/SleepScore

Tutorials

The hitchhiker’s guide to GWAS

Marzia compiled a step-by-step tutorial on how to impute, clean and process GWAS data sets, as well as determine ancestry and relatedness levels. The tutorial describes in detail the procedures followed in our 2018 BRAIN paperGenetic study of multimodal imaging Alzheimer’s disease progression score implicates novel loci“. It is intended to foster reproducibility of results and standardisation of processing pipelines, as well as a friendly, easy-to-follow guide to researchers with limited expertise in genetic data processing. Hope you find it helpful! For issues or feedback, please get in touch by emailing Marzia (marzia.scelsi.15@ucl.ac.uk).

Access the guide here: https://rpubs.com/maffleur/452627